Core Files and Stuff
There is an excellent help file that is included with Doxygen. It explains everything you need to know to use Doxygen. You'll find it in the directory where Doxygen is installed. (It's in the Start menu as well.)
Simple Example (using yet-another Stack class)
Non-Trivial Documentation Examples
Other Related Code Documentation Projects
From the FAQ:
"In general, literate programs combine source and documentation in a single file. Literate programming tools then parse the file to produce either readable documentation or compilable source."From Donald Knuth:
"Let us change our traditional attitude to the construction of programs: Instead of imagining that our main task is to instruct a computer what to do, let us concentrate rather on explaining to human beings what we want a computer to do."